====== AMAPstudio documentation ======

AMAPstudio is a software suite for plants architecture modelling. It contains applications and models to rebuild, explore, analyse and study the growth of plants from an architectural point of view.

===== General documentations =====

  * [[whoCanJoinAMAPstudio|Who can join the AMAPstudio project ?]]

===== Documentation for the AMAPstudio modellers =====

  * [[https://amap-dev.cirad.fr/projects/jeeb|The Redmine project manager for AMAPstudio]]
  * [[howToInstallTheSVNAMAPstudioVersionForTheModellers|How to install the SVN-AMAPstudio version for the modellers]]
  * [[private:howToCompileAMAPstudio|How to compile AMAPstudio ?]]
  * [[private:howToBuildAnAMAPstudioInstaller|How to build an AMAPstudio installer for your partners with only your module ?]]


===== Software documentations =====

  * The documentation for Xplo is [[soft:xplo:documentation|here]].
  * The documentation for Simeo is [[soft:simeo:documentation|here]].
  * The installation documentation can be found on the [[download|download page]].

===== Presentations =====

  * Capsis / AMAPstudio, an integrative approach for forests and plants architecture modelling. "Modelling of ecosystems by tools from computer sciences", international summer school in Prague (Czech Republic), 16-20 September, 2013 - {{:capsis-amapstudio-integrative-approach-v2.pdf|.pdf}} - {{:capsis-amapstudio-integrative-approach-v2.odp|.odp}}
  * {{:amapstudio_presentation.pdf|AMAPstudio: A Software Suite for Plants Architecture Modelling}}, by S. Griffon at PMA'12: 2012 IEEE Fourth International Symposium on Plant Growth, Modeling, Simulation, Vizualization and Applications, Shanghai, China 2012
  * A {{:sg-bresil-oct2011-amapstudio.pdf|presentation of AMAPstudio}} at the first French-Brazilian FSPM meeting (26.10.2011)
  * Plant architecture {{:sg-measure_softwate_26_10_11.pdf|acquisition and edition software}} (26.10.2011)

===== Training =====
  * [[formation:MESP|MESP training]] (Mesure et Exploration de la Structure des Plantes / Measurement and Exploration of Structure of Plants) (2-3 april 2015).



===== Technical documentation =====

Developpers and modellers of the AMAPstudio co-development community may be interested by the following technical topics.

  * [[private:DISPLAY_java_GL2_exception|Exception at Xplo / Simeo launching time: DISPLAY java GL2]]

  * [[private:Upgrade to Jogl 1507|Upgrade to Jogl 1507 to fix a MacOSX bug (nswindow drag regions...) requires Java 1.11]]
  * [[private:EncodingErrorDuringSVNUpdate|SVN checkout notifies an encoding problem (svn: Can't convert string from 'UTF-8' to native encoding)]]
  * [[private:LinkToPublicDropBoxFiles|Make links from the wiki to data files in DropBox]]
  * [[private:AmapServersAndDokuwikiUpgrade|Technical memo: Amap servers and Dokuwiki upgrade]]
  * [[private:MacOSXandJDK1.7|Upgrade Java to JDK 1.8 under Mac OS X]]
  * [[private:UpgradeToSmartSVN8|Upgrade to SmartSVN 8 needed to reconnect to the SVN server after an SSL upgrade (18.4.2014)]]
  * [[private:SmartSVNCrashUnderUbuntu13.10|SmartSVN crashes at start time under Ubuntu 13.10]]
  * [[private:HowToUseTheMBBCluster|How to use the MBB cluster (Labex Cemeb members only, including AMAP members)]]  
  * [[private:CenteredOPFmanagement|New management of position and rotations in OPF files]]  
  * [[private:FileReader|How to use the FileReader to read complex text files]]
  * [[private:SmartSVNupdate500InternalErrorIssue|Update in SmartSVN fails with '500 Internal Server Error']]
  * {{:java-training.pdf|An introduction to the Java language}} (copied from the [[https://www.inra.fr/capsis|Capsis web site]]).
  * [[private:encodingIssues|Encoding issues]]
  * [[private:installEclipseWithSVN|Install Eclipse with SVN +++]]
  * **[[private:installMATinEcWithSVNlipse|Install MAT in Eclipse to browse memory usage (fr)]]**
  * [[private:aToolToClassifyEasily|A tool to classify easily]]
  * **{{:tutoriel_ubuntu_eclipse_java.pdf|Tutorial to install ubuntu, the JDK and eclipse (fr)}}**  
  * [[private:technicalNotes|Technical notes (for developers)]]