====== AMAPstudio Publications ======

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Griffon S., de Coligny F, **2014**. AMAPstudio: an Editing and Simulation Software Suite for Plants Architecture Modelling. **Ecological Modelling** (2014) 290:3-10, [[https://dx.doi.org/10.1016/j.ecolmodel.2013.10.037|online]]

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[[https://amapstudio.cirad.fr/soft/xplo/private/private/xplomanualplantarchitecturebackground|Background resources about Plant Architecture]]


Barczi J.-F., Rey H., Griffon S., Jourdan C. **2018**. DigR: a generic model and its open source simulation software to mimic three-dimensional root-system architecture diversity. **Annals of Botany**, Volume 121, Issue 5, 18 April 2018, Pages 1089–1104, https://doi.org/10.1093/aob/mcy018

Momo Takoudjou S, Ploton P, Sonké B, Hackenberg J, Griffon S, de Coligny F, Kamdem N G, Libalah M, Mofack G II, Le Moguédec G, Pélissier R, Barbier N. **2017**. Using terrestrial laser scanning data to estimate large tropical trees biomass and calibrate allometric models: A comparison with traditional destructive approach. **Methods Ecol Evol**. 2017;00:1–12. https://doi.org/10.1111/2041-210X.12933

Perez R, Pallas B, Le Moguédec G, Rey H, Griffon S, Caliman JP, Costes E and Dauzat J. **2016**. Integrating mixed-effect models into an architectural plant model to simulate inter- and intra-progeny variability: a case study on oil palm (Elaeis guineensis Jacq.). **Journal of Experimental Botany**. doi:10.1093/jxb/erw203

Rakocevic M, Matsunaga F.T., Novaes M.P., Oyamada R.S., Scholz dos Santos, Griffon S, Dauzat J, Costes E. **2015**. How density and planting pattern affect coffee plant structure and berry distribution in first production year? Proceedings of the **25th International Conference on Coffee Science**. Paris: ASIC, 42-46. ISBN 978-2-900212-24-0

Gammoudi, S., El Masoudy, H., Rey, H., Griffon, S., Bennaceur, M., Littardi, C., Bouguedoura, N., Bensalah, M., Lecoustre, R., Elhoumaizi, M. A., **2015**. Utilisation de l’outil Xplo pour construire une maquette 3D du palmier dattier (Phoenix dactylifera L.).. Premiére journées des projets PHC Maghreb. Rabat, Maroc : Premiére journées des projets PHC Maghreb, 25-26/11/2015.

Antin, C., Grau, E., Vincent, G., Durrieu, S., Jourdan, M., Barczi, J.-F., Caraglio, Y., Griffon, S., Pélissier, R., **2015**. From leave scale to tree scale: which structural parameters influence a simulated full-waveform large-footprint LiDAR signal ? Proceedings of **SilviLaser 2015**. La Grande Motte, France : 110-112.SilviLaser 2015, 28-30/09/2015.

Griffon, S., de Coligny, F., **2013**. AMAPstudio: a 3D Interactive Software Suite for Plants Architecture Modelling. In Nikinmaa, E., Nygren, P., Sievänen, R., Godin, C., Lintunen, A. (Eds) Proceedings of the 7th International Conference on Functional Structural Plant Models, Saariselka, Finland, 9 14 June 2013. Vantaa, Finlande : Finnish Society of Forest Science, 198-200 p.


Griffon S., de Coligny F. **2012**. AMAPstudio: a Software Suite for Plants Architecture Modelling. In: Kang M., Dumont Y., Guo Y., eds. Plant Growth Modeling, Simulation, Vizualization and Applications. Proceedings of PMA12. Shanghai, China: IEEE press, pp. 141:147. {{:articlepma2012-final.pdf|pdf}}.

Taugourdeau O., Barczi J.-F., Caraglio Y. **2012**. Simulation of Morphogenetical Gradients Using a Minimal Functional-Structural Plant Model (FSPM). In: Kang M., Dumont Y., Guo Y., eds. Plant Growth Modeling, Simulation, Vizualization and Applications. Proceedings of PMA12. Shanghai, China: IEEE press, pp. 379:387.

Feng L., de Reffye P., Dreyfus P., Auclair D. **2012**, Connecting an architectural plant model to a forest stand dynamics model—application to Austrian black pine stand visualization.  **Annals of Forest Science** (2012) 69-245:255 [[https://hal.archives-ouvertes.fr/docs/00/93/07/15/PDF/hal-00930715.pdf|pdf]]

Griffon S., Barczi J.-F., de Coligny F., **2011**. Xplo: a software for plant architecture exploration. IBC-2011 Melbourne, Australia, Poster.

Taugourdeau O., Dauzat J., Griffon S., de Coligny F., Sabatier S., Caraglio Y. & Barthélémy D., **2010**. Retrospective analysis of fir sapling growth vs. light interception, Actes du 6ème colloque international sur la modélisation structure-fonction (Functional-Structural Plant Models, FSPM), 12-17/09/2010, Université de Californie à Davis (USA), pages (93-95). [[https://www.plantsciences.ucdavis.edu/symposium/2010/fspm/pdf/Proceedings_FSPM2010.pdf|pdf]]

Paul-Henry Cournède, Thomas Guyard, Benoit Bayol, Sébastien Griffon, François de Coligny, Philippe Borianne, Marc Jaeger, Philippe de Reffye, **2009**. A Forest Growth Simulator Based on Functional-Structural Modelling of Individual Trees. Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Beijing : Chine (2009) [[https://hal.cirad.fr/view_by_stamp.php?&halsid=0ug45hohao5cs5qm60m7if8pd6&label=CIRAD&langue=fr&action_todo=view&id=inria-00529096&version=1&view=extended_view|pdf]]